TSS: Rfmm 100313.1: Difference between revisions

Revision as of 09:47, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_100313.1
Species:	mouse
Chr:	chr10

Start:	117888818
End:	117888823
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Gm32663
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	39782
Nearest PromoterID:	XR_003948954.1
Entrez ID:	Gm32663
Nearest Unigene:	XR_003948954
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Gm32663
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=exon (XR_872079.1, exon 4 of 4)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XR_003948954.1
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=XR_003948954
 |peak_score=1