TSS: Rfmm 100391.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENSMUST00000147598.8:0 ENSMUST00000138410.8:0 ENSMUST00000144825.8:0 ENSMUST00000148954.8:0 ENSMUST00000144959.8:0 AK039673:0 AB051560:0 AB051561:0 ENSMUST00000147454.8:-96 ENSMUST00000105262.9:-105 NM_130891.2:-105 NM_001358811.1:-105 NM_001277294.1:-105 NM_028736.2:-105 NM_001358810.1:-105 BC067398:-105
|annotation=exon (NM_001277294.1, exon 1 of 23)
|annotation=exon (NM_001277294.1, exon 1 of 23)
|ccre_category=N
|ccre_category=N
Line 25: Line 26:
|nearest_promoter_id=NM_001358811.1
|nearest_promoter_id=NM_001358811.1
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=ENSMUST00000147454.8:-96 ENSMUST00000105262.9:-105 NM_130891.2:-105 NM_001358811.1:-105 NM_001277294.1:-105 NM_028736.2:-105 NM_001358810.1:-105 BC067398:-105
|nearest_unigene=NM_001277293
|nearest_unigene=NM_001277293
|peak_score=1
|peak_score=1

Revision as of 09:49, 13 November 2024

Basic information about the TSS

TSS ID:rfmm_100391.1
Species:mouse
Chr:chr10
Start:119655399
End:119655446
Strand:+
Source datasetsFANTOM5|EPD
ProtocolCAGE|TSS_database
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000147598.8:0
ENSMUST00000138410.8:0
ENSMUST00000144825.8:0
ENSMUST00000148954.8:0
ENSMUST00000144959.8:0
AK039673:0
AB051560:0
AB051561:0
GeneID:74053
HGNC/MGI_ID:MGI:1276533 MGI:1921303
UniProt_ID:D3YWY4 D3Z6T4 Q925T6
Nearer transcript ids and distances:
  • ENSMUST00000147454.8:-96
  • ENSMUST00000105262.9:-105
  • NM_130891.2:-105
  • NM_001358811.1:-105
  • NM_001277294.1:-105
  • NM_028736.2:-105
  • NM_001358810.1:-105
  • BC067398:-105
view more...
Gene_name:Grip1
Gene_symbol:Grip1 Ncoa2
Gene_synonyms:4931400F03Rik D1Ertd433e Grip1 KAT13C SRC-2 TIF-2 TIF2 TIF2/GRIP-1 bHLHe75 eb glucocorticoid_receptor-interacting_protein_1
Gene_source:MGI:1276533 MGI:1921303



TATA-Box annotation

Distance to TSS:128
Nearest PromoterID:NM_001358811.1
Entrez ID:Grip1
Nearest Unigene:NM_001277293
Nearest Refseq:
Nearest Ensembl:
Gene Name:Grip1
Gene Alias:
Gene Type:
CpG%:0.063830
GC%:0.625000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfmm_100391.1&oldid=3397458"