TSS: Rfmm 100399.1: Difference between revisions

Revision as of 09:49, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_100399.1
Species:	mouse
Chr:	chr10

Start:	119828868
End:	119828877
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK016420:-38
GeneID:	74053
HGNC/MGI_ID:	MGI:1921303
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000105261.9:-41 NM_001277295.1:-41 NR_102387.1:-41 AK029905:-41 ENSMUST00000154238.8:98 ENSMUST00000081260.3:134 AY255674:134 AY294283:153 ENSMUST00000130387.8:-243 view more...

Gene_name:	Grip1
Gene_symbol:	Grip1
Gene_synonyms:	4931400F03Rik eb
Gene_source:	MGI:1921303

TATA-Box annotation

Distance to TSS:	45
Nearest PromoterID:	NM_001277295.1
Entrez ID:	Grip1
Nearest Unigene:	NM_001277293
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Grip1
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK016420:-38 ENSMUST00000105261.9:-41 NM_001277295.1:-41 NR_102387.1:-41 AK029905:-41 ENSMUST00000154238.8:98 ENSMUST00000081260.3:134 AY255674:134 AY294283:153 ENSMUST00000130387.8:-243
 |annotation=promoter-TSS (NM_001277295.1)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001277295.1
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000105261.9:-41 NM_001277295.1:-41 NR_102387.1:-41 AK029905:-41 ENSMUST00000154238.8:98 ENSMUST00000081260.3:134 AY255674:134 AY294283:153 ENSMUST00000130387.8:-243
 |nearest_unigene=NM_001277293
 |peak_score=1