TSS: Rfmm 10042.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=intron (XM_017321470.3, intron 3 of 10)
|annotation=intron (XM_017321470.3, intron 3 of 10)
|ccre_category=N
|ccre_category=N
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|nearest_promoter_id=NM_178653.3
|nearest_promoter_id=NM_178653.3
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=
|nearest_unigene=NM_178653
|nearest_unigene=NM_178653
|peak_score=1
|peak_score=1

Revision as of 09:49, 13 November 2024

Basic information about the TSS

TSS ID:rfmm_10042.1
Species:mouse
Chr:chr1
Start:179504815
End:179504855
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:Sccpdh
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:9039
    Nearest PromoterID:NM_178653.3
    Entrez ID:Sccpdh
    Nearest Unigene:NM_178653
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Sccpdh
    Gene Alias:
    Gene Type:
    CpG%:0.000000
    GC%:0.487805
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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