TSS: Rfmm 100496.1: Difference between revisions

Revision as of 09:50, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_100496.1
Species:	mouse
Chr:	chr10

Start:	120734932
End:	120734942
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2344750,EM10E0965736)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_177092.4:56
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000092143.12:-64 AK137163:90 AK086975:90 BC096447:175 LF202981:-314 MA438558:-314 view more...

Gene_name:	Gm4473
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	3
Nearest PromoterID:	XR_001779656.3
Entrez ID:	Gm4473
Nearest Unigene:	XR_001779656
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Gm4473
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.272727
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_177092.4:56 ENSMUST00000092143.12:-64 AK137163:90 AK086975:90 BC096447:175 LF202981:-314 MA438558:-314
 |annotation=promoter-TSS (NM_177092.4)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XR_001779656.3
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000092143.12:-64 AK137163:90 AK086975:90 BC096447:175 LF202981:-314 MA438558:-314
 |nearest_unigene=XR_001779656
 |peak_score=1