TSS: Rfmm 100909.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000218492.2:0 ENSMUST00000218302.2:0 ENSMUST00000035735.11:0 AK131609:0 AK131662:0 BC064011:0 BC099496:0 NM_001098789.1:-13 LF198291:-14 MA433868:-14 LF225160:35 MA460737:35 | |||
|annotation=promoter-TSS (NM_001098789.1) | |annotation=promoter-TSS (NM_001098789.1) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001098789.1 | |nearest_promoter_id=NM_001098789.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=NM_001098789.1:-13 LF198291:-14 MA433868:-14 LF225160:35 MA460737:35 | |||
|nearest_unigene=NM_001098789 | |nearest_unigene=NM_001098789 | ||
|peak_score=1 | |peak_score=1 | ||
Revision as of 09:58, 13 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DRA000914 | |||||||||||||
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| Protocol | CAGE|TSS_database|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D2346866,EM10E0966614) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NM_001098789.1 |
| Entrez ID: | Ndufa4l2 |
| Nearest Unigene: | NM_001098789 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Ndufa4l2 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.535714 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.