TSS: Rfmm 100971.1: Difference between revisions

Revision as of 09:58, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_100971.1
Species:	mouse
Chr:	chr10

Start:	127541151
End:	127541160
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001081219.2:-26 AF009960:-26
GeneID:	432516
HGNC/MGI_ID:	MGI:107732
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000079590.7:-112 BC147605:-112 BC147612:-112 view more...

Gene_name:	Myo1a
Gene_symbol:	Myo1a
Gene_synonyms:	BBM-I Myhl brush_border_myosin_1
Gene_source:	MGI:107732

TATA-Box annotation

Distance to TSS:	30
Nearest PromoterID:	NM_001081219.2
Entrez ID:	Myo1a
Nearest Unigene:	NM_001081219
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Myo1a
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001081219.2:-26 AF009960:-26 ENSMUST00000079590.7:-112 BC147605:-112 BC147612:-112
 |annotation=promoter-TSS (NM_001081219.2)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001081219.2
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000079590.7:-112 BC147605:-112 BC147612:-112
 |nearest_unigene=NM_001081219
 |peak_score=1
@@ Line 33: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=AF009960
+|transcript_name=NM_001081219.2 AF009960
 |tss_cluster_detected=2
 |tss_id=rfmm_100971.1