TSS: Rfmm 101275.1: Difference between revisions

Revision as of 10:04, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_101275.1
Species:	mouse
Chr:	chr10

Start:	128579739
End:	128579779
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	pELS,CTCF-bound (EM10D1198906,EM10E0492488)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001374028.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	BC006713:-146 ENSMUST00000026414.9:-165 JN832678:-165 JN832679:-165 JN832683:-165 NM_016811.3:-166 view more...

Gene_name:	Dgka
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-12
Nearest PromoterID:	NM_001374028.1
Entrez ID:	Dgka
Nearest Unigene:	XR_001779449
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Dgka
Gene Alias:
Gene Type:
CpG%:	0.075000
GC%:	0.658537
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001374028.1:0 BC006713:-146 ENSMUST00000026414.9:-165 JN832678:-165 JN832679:-165 JN832683:-165 NM_016811.3:-166
 |annotation=promoter-TSS (NM_001374028.1)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001374028.1
 |nearest_refseq=
+|nearest_transcripts=BC006713:-146 ENSMUST00000026414.9:-165 JN832678:-165 JN832679:-165 JN832683:-165 NM_016811.3:-166
 |nearest_unigene=XR_001779449
 |peak_score=1