TSS: Rfmm 101448.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=intron (XM_017314249.3, intron 1 of 8)
|annotation=intron (XM_017314249.3, intron 1 of 8)
|ccre_category=pELS
|ccre_category=pELS
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|nearest_promoter_id=NM_007879.2
|nearest_promoter_id=NM_007879.2
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=
|nearest_unigene=XM_017314249
|nearest_unigene=XM_017314249
|peak_score=1
|peak_score=1

Revision as of 10:06, 13 November 2024

Basic information about the TSS

TSS ID:rfmm_101448.1
Species:mouse
Chr:chr11
Start:3215790
End:3215803
Strand:+
Source datasetsDRA000914
ProtocolCAGE_and_CAGEscan
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:pELS (EM10D1199475,EM10E0492695)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:Drg1
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:667
    Nearest PromoterID:NM_007879.2
    Entrez ID:Drg1
    Nearest Unigene:XM_017314249
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Drg1
    Gene Alias:
    Gene Type:
    CpG%:0.153846
    GC%:0.642857
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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