TSS: Rfmm 101940.1: Difference between revisions
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001361904.1:59 ENSMUST00000135124.8:61 LF226090:-95 MA461667:-95 ENSMUST00000140765.8:-100 LF226089:-188 MA461666:-188 LF226091:283 MA461668:283 LF226088:-313 MA461665:-313 BC013670:-346 AK088582:-414 ENSMUST00000093350.10:-417 BC057354:-417 ENSMUST00000101554.9:-419 LF226092:422 MA461669:422 NM_001252287.2:-426 NM_001361903.1:-426 AK201619:-438 AK204071:-438 ENSMUST00000125929.2:-444 AK008811:-444 BC061232:-444 NM_001252288.1:447 AK220536:-450 AK150009:-450 ENSMUST00000003461.15:-452 AK155856:-456 NM_001361902.1:468 NM_001361905.1:-479 AK169286:-479 NM_010956.4:-488 NM_001252282.1:-488 NM_001252283.1:-488 AK147289:-488 ENSMUST00000081894.5:494 BC049104:494 | |||
|annotation=promoter-TSS (NM_001252288.1) | |annotation=promoter-TSS (NM_001252288.1) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=XM_006514584.4 | |nearest_promoter_id=XM_006514584.4 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=ENSMUST00000135124.8:61 LF226090:-95 MA461667:-95 ENSMUST00000140765.8:-100 LF226089:-188 MA461666:-188 LF226091:283 MA461668:283 LF226088:-313 MA461665:-313 BC013670:-346 AK088582:-414 ENSMUST00000093350.10:-417 BC057354:-417 ENSMUST00000101554.9:-419 LF226092:422 MA461669:422 NM_001252287.2:-426 NM_001361903.1:-426 AK201619:-438 AK204071:-438 ENSMUST00000125929.2:-444 AK008811:-444 BC061232:-444 NM_001252288.1:447 AK220536:-450 AK150009:-450 ENSMUST00000003461.15:-452 AK155856:-456 NM_001361902.1:468 NM_001361905.1:-479 AK169286:-479 NM_010956.4:-488 NM_001252282.1:-488 NM_001252283.1:-488 AK147289:-488 ENSMUST00000081894.5:494 BC049104:494 | |||
|nearest_unigene=NM_010956 | |nearest_unigene=NM_010956 | ||
|peak_score=1 | |peak_score=1 | ||
Revision as of 10:14, 13 November 2024
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | pELS,CTCF-bound (EM10D2349695,EM10E0968142) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -27 |
|---|---|
| Nearest PromoterID: | XM_006514584.4 |
| Entrez ID: | Ogdh |
| Nearest Unigene: | NM_010956 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Ogdh |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.192308 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENSMUST00000135124.8:61 LF226090:-95 MA461667:-95 ENSMUST00000140765.8:-100 LF226089:-188 MA461666:-188 LF226091:283 MA461668:283 LF226088:-313 MA461665:-313 BC013670:-346 AK088582:-414 ENSMUST00000093350.10:-417 BC057354:-417 ENSMUST00000101554.9:-419 LF226092:422 MA461669:422 NM_001252287.2:-426 NM_001361903.1:-426 AK201619:-438 AK204071:-438 ENSMUST00000125929.2:-444 AK008811:-444 BC061232:-444 NM_001252288.1:447 AK220536:-450 AK150009:-450 ENSMUST00000003461.15:-452 AK155856:-456 NM_001361902.1:468 NM_001361905.1:-479 AK169286:-479 NM_010956.4:-488 NM_001252282.1:-488 NM_001252283.1:-488 AK147289:-488 ENSMUST00000081894.5:494 BC049104:494" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.