TSS: Rfmm 102850.1: Difference between revisions

Revision as of 10:29, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_102850.1
Species:	mouse
Chr:	chr11

Start:	23583647
End:	23583669
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2354020,EM10E0969850)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000109532.9:8
GeneID:	71675
HGNC/MGI_ID:	MGI:1918925
UniProt_ID:	Q68FF0
Nearer transcript ids and distances:	ENSMUST00000180260.8:16 ENSMUST00000141353.8:16 ENSMUST00000131612.2:16 NR_156450.1:16 NM_027860.3:16 NM_001347242.1:16 AK053838:16 BC072622:26 BC079876:30 AK129454:49 BC055049:49 ENSMUST00000155903.8:98 AK029538:98 view more...

Gene_name:	0610010F05Rik
Gene_symbol:	Sanbr
Gene_synonyms:	0610010F05Rik
Gene_source:	MGI:1918925

TATA-Box annotation

Distance to TSS:	19
Nearest PromoterID:	XM_017314769.3
Entrez ID:	0610010F05Rik
Nearest Unigene:	XM_036156995
Nearest Refseq:
Nearest Ensembl:
Gene Name:	0610010F05Rik
Gene Alias:
Gene Type:
CpG%:	0.136364
GC%:	0.782609
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENSMUST00000109532.9:8 ENSMUST00000180260.8:16 ENSMUST00000141353.8:16 ENSMUST00000131612.2:16 NR_156450.1:16 NM_027860.3:16 NM_001347242.1:16 AK053838:16 BC072622:26 BC079876:30 AK129454:49 BC055049:49 ENSMUST00000155903.8:98 AK029538:98
 |annotation=promoter-TSS (NM_001347242.1)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XM_017314769.3
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000180260.8:16 ENSMUST00000141353.8:16 ENSMUST00000131612.2:16 NR_156450.1:16 NM_027860.3:16 NM_001347242.1:16 AK053838:16 BC072622:26 BC079876:30 AK129454:49 BC055049:49 ENSMUST00000155903.8:98 AK029538:98
 |nearest_unigene=XM_036156995
 |peak_score=1