TSS: Rfmm 103927.1: Difference between revisions

Revision as of 10:46, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_103927.1
Species:	mouse
Chr:	chr11

Start:	47270180
End:	47270195
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	pELS (EM10D2359494,EM10E0971795)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_011891.5:28
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AK040974:51 BC130019:61 ENSMUST00000077221.6:-154 AB024923:-154 view more...

Gene_name:	Sgcd
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-35
Nearest PromoterID:	NM_011891.5
Entrez ID:	Sgcd
Nearest Unigene:	XM_036156700
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Sgcd
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_011891.5:28 AK040974:51 BC130019:61 ENSMUST00000077221.6:-154 AB024923:-154
 |annotation=promoter-TSS (Gm12176)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_011891.5
 |nearest_refseq=
+|nearest_transcripts=AK040974:51 BC130019:61 ENSMUST00000077221.6:-154 AB024923:-154
 |nearest_unigene=XM_036156700
 |peak_score=1