TSS: Rfmm 104734.1: Difference between revisions

Revision as of 10:59, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_104734.1
Species:	mouse
Chr:	chr11

Start:	54459025
End:	54459039
Strand:	+

Source datasets

FANTOM5|DRA000914

Protocol

CAGE|CAGE_and_CAGEscan

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	DNase-H3K4me3,CTCF-bound (EM10D2362182,EM10E0973031)
Category:	DNase-H3K4me3

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Rapgef6
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-27631
Nearest PromoterID:	XM_006532565.5
Entrez ID:	Rapgef6
Nearest Unigene:	XM_017314348
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Rapgef6
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.333333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (XR_004936871.1, intron 5 of 25)
 |ccre_category=DNase-H3K4me3
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XM_006532565.5
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=XM_017314348
 |peak_score=1