TSS: Rfmm 111409.1: Difference between revisions

Revision as of 12:48, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_111409.1
Species:	mouse
Chr:	chr11

Start:	100627050
End:	100627061
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	dELS,CTCF-bound (EM10D1259585,EM10E0519914)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Rab5c
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1986
Nearest PromoterID:	NM_024456.5
Entrez ID:	Rab5c
Nearest Unigene:	XM_036156452
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Rab5c
Gene Alias:
Gene Type:
CpG%:	0.090909
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_024456.5, intron 1 of 5)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_024456.5
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=XM_036156452
 |peak_score=1