TSS: Rfmm 117790.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENSMUST00000219197.2:0 ENSMUST00000219667.2:0 ENSMUST00000082024.7:0 NM_019579.3:0 AK133187:0 BC067404:0 AK032731:0 AK162014:0 BC075698:0 AK014444:1 AF199008:2 BC138624:49
|annotation=promoter-TSS (NM_019579.3)
|annotation=promoter-TSS (NM_019579.3)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_019579.3
|nearest_promoter_id=NM_019579.3
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=AK014444:1 AF199008:2 BC138624:49
|nearest_unigene=XM_006516098
|nearest_unigene=XM_006516098
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENSMUST00000219197.2 ENSMUST00000219667.2 ENSMUST00000082024.7 AK133187 BC067404 AK032731 AK162014 BC075698
|transcript_name=ENSMUST00000219197.2 ENSMUST00000219667.2 ENSMUST00000082024.7 NM_019579.3 AK133187 BC067404 AK032731 AK162014 BC075698
|tss_cluster_detected=5
|tss_cluster_detected=5
|tss_id=rfmm_117790.1
|tss_id=rfmm_117790.1

Revision as of 14:33, 13 November 2024

Basic information about the TSS

TSS ID:rfmm_117790.1
TSS ID(Version3):mm_108267.1
mm_108266.1
mm_108268.1
Species:mouse
Chr:chr12
Start:78795640
End:78795793
Strand:+
Source datasetsFANTOM5|EPD|PRJDB10397|GSE117655|DRA000914
ProtocolCAGE|TSS_database|C1CAGE|deepCAGE|CAGE_and_CAGEscan
TSS cluster detected*5

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS (EM10D2410185,EM10E0995210)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000219197.2:0
ENSMUST00000219667.2:0
ENSMUST00000082024.7:0
NM_019579.3:0
AK133187:0
BC067404:0
AK032731:0
AK162014:0
BC075698:0
GeneID:56217
HGNC/MGI_ID:MGI:1927339
UniProt_ID:A0A1W2P6P0 A0A1W2P7Z6 B2RRY4
Nearer transcript ids and distances:
  • AK014444:1
  • AF199008:2
  • BC138624:49
view more...
Gene_name:Mpp5
Gene_symbol:Pals1
Gene_synonyms:3830420B02Rik Mpp5 Pals1
Gene_source:MGI:1927339



TATA-Box annotation

Distance to TSS:-5
Nearest PromoterID:NM_019579.3
Entrez ID:Mpp5
Nearest Unigene:XM_006516098
Nearest Refseq:
Nearest Ensembl:
Gene Name:Mpp5
Gene Alias:
Gene Type:
CpG%:0.117647
GC%:0.681818
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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