TSS: Rfmm 119908.1: Difference between revisions

Revision as of 15:07, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_119908.1
Species:	mouse
Chr:	chr12

Start:	109525533
End:	109525546
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	dELS (EM10D1326794,EM10E0548460)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF234715:-85 MA470292:-85
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	BC028971:-201 LF234714:-212 MA470291:-212 AK013724:-392 LF234716:410 MA470293:410 LF234717:488 MA470294:488 view more...

Gene_name:	Mir770
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-4587
Nearest PromoterID:	NR_030427.1
Entrez ID:	Mir770
Nearest Unigene:	NR_030427
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Mir770
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.642857
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF234715:-85 MA470292:-85 BC028971:-201 LF234714:-212 MA470291:-212 AK013724:-392 LF234716:410 MA470293:410 LF234717:488 MA470294:488
 |annotation=exon (NR_003633.3, exon 5 of 5)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_030427.1
 |nearest_refseq=
+|nearest_transcripts=BC028971:-201 LF234714:-212 MA470291:-212 AK013724:-392 LF234716:410 MA470293:410 LF234717:488 MA470294:488
 |nearest_unigene=NR_030427
 |peak_score=1