TSS: Rfmm 12396.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENSMUST00000147147.8:0 ENSMUST00000046227.12:0 ENSMUST00000114432.9:0 ENSMUST00000102938.10:0 ENSMUST00000091348.11:0 ENSMUST00000200655.5:0 ENSMUST00000139000.4:0 ENSMUST00000152161.8:0 ENSMUST00000150379.2:0 NM_001012518.3:0 NM_001109687.2:0 NM_172545.4:0 NM_001109686.2:0 AK082062:0 AK052174:0 AB205007:0 AK054555:0 AK084994:0 AK043898:0
|annotation=promoter-TSS (NM_001012518.3)
|annotation=promoter-TSS (NM_001012518.3)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_001012518.3
|nearest_promoter_id=NM_001012518.3
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=
|nearest_unigene=XM_017319336
|nearest_unigene=XM_017319336
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENSMUST00000147147.8 ENSMUST00000046227.12 ENSMUST00000114432.9 ENSMUST00000102938.10 ENSMUST00000091348.11 ENSMUST00000200655.5 ENSMUST00000139000.4 ENSMUST00000152161.8 ENSMUST00000150379.2 AK082062 AK052174 AB205007 AK054555 AK084994 AK043898
|transcript_name=ENSMUST00000147147.8 ENSMUST00000046227.12 ENSMUST00000114432.9 ENSMUST00000102938.10 ENSMUST00000091348.11 ENSMUST00000200655.5 ENSMUST00000139000.4 ENSMUST00000152161.8 ENSMUST00000150379.2 NM_001012518.3 NM_001109687.2 NM_172545.4 NM_001109686.2 AK082062 AK052174 AB205007 AK054555 AK084994 AK043898
|tss_cluster_detected=5
|tss_cluster_detected=5
|tss_id=rfmm_12396.1
|tss_id=rfmm_12396.1

Revision as of 16:10, 13 November 2024

Basic information about the TSS

TSS ID:rfmm_12396.1
TSS ID(Version3):mm_17130.1
Species:mouse
Chr:chr2
Start:24809584
End:24809628
Strand:-
Source datasetsFANTOM5|EPD|DRA000914|PRJDB10397|GSE117655
ProtocolCAGE|TSS_database|CAGE_and_CAGEscan|C1CAGE|deepCAGE
TSS cluster detected*5

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS,CTCF-bound (EM10D2628101,EM10E1083939)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000147147.8:0
ENSMUST00000046227.12:0
ENSMUST00000114432.9:0
ENSMUST00000102938.10:0
ENSMUST00000091348.11:0
ENSMUST00000200655.5:0
ENSMUST00000139000.4:0
ENSMUST00000152161.8:0
ENSMUST00000150379.2:0
NM_001012518.3:0
NM_001109687.2:0
NM_172545.4:0
NM_001109686.2:0
AK082062:0
AK052174:0
AB205007:0
AK054555:0
AK084994:0
AK043898:0
GeneID:77683
HGNC/MGI_ID:MGI:1924933
UniProt_ID:A0A0G2JEQ4 A0A0H2UH19 A0A1B0GXE2 A2AIS5 Q5DW34 Q8BRN2 Q8C3T0 Z4YJZ7
Nearer transcript ids and distances:
    Gene_name:Ehmt1
    Gene_symbol:Ehmt1
    Gene_synonyms:9230102N17Rik KMT1D
    Gene_source:MGI:1924933



    TATA-Box annotation

    Distance to TSS:15
    Nearest PromoterID:NM_001012518.3
    Entrez ID:Ehmt1
    Nearest Unigene:XM_017319336
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Ehmt1
    Gene Alias:
    Gene Type:
    CpG%:0.159091
    GC%:0.844444
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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