TSS: Rfmm 128804.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=NM_001136240.1:56 ENSMUST00000067620.12:79 AK052715:79 AK087570:160 AK164042:221 ENSMUST00000125796.2:227
|annotation=promoter-TSS (NM_001136240.1)
|annotation=promoter-TSS (NM_001136240.1)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_019583.3
|nearest_promoter_id=NM_019583.3
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=ENSMUST00000067620.12:79 AK052715:79 AK087570:160 AK164042:221 ENSMUST00000125796.2:227
|nearest_unigene=XM_030247884
|nearest_unigene=XM_030247884
|peak_score=1
|peak_score=1

Revision as of 17:27, 13 November 2024

Basic information about the TSS

TSS ID:rfmm_128804.1
Species:mouse
Chr:chr14
Start:29730887
End:29730901
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS (EM10D2464606,EM10E1016813)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:NM_001136240.1:56
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000067620.12:79
  • AK052715:79
  • AK087570:160
  • AK164042:221
  • ENSMUST00000125796.2:227
view more...
Gene_name:Il17rb
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-41
Nearest PromoterID:NM_019583.3
Entrez ID:Il17rb
Nearest Unigene:XM_030247884
Nearest Refseq:
Nearest Ensembl:
Gene Name:Il17rb
Gene Alias:
Gene Type:
CpG%:0.000000
GC%:0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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