TSS: Rfmm 130290.1: Difference between revisions

Revision as of 17:51, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_130290.1
Species:	mouse
Chr:	chr14

Start:	53607443
End:	53607447
Strand:	+

Source datasets

DRA000914

Protocol

CAGE_and_CAGEscan

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	pELS (EM10D2470363,EM10E1019128)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	U07878:64
GeneID:	634322
HGNC/MGI_ID:	MGI:3822547
UniProt_ID:
Nearer transcript ids and distances:	AF479020:87 ENSMUST00000103635.3:306 L21700:306 X76971:306 M73761:374 KC202840:473 KC202833:473 KC202845:473 KC202827:473 view more...

Gene_name:	Trav14n-3
Gene_symbol:	Trav14d-3-dv8
Gene_synonyms:
Gene_source:	MGI:3822547

TATA-Box annotation

Distance to TSS:	-89
Nearest PromoterID:	id-Trav14n-3
Entrez ID:	Trav14n-3
Nearest Unigene:	id-Trav14n-3
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Trav14n-3
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=U07878:64 AF479020:87 ENSMUST00000103635.3:306 L21700:306 X76971:306 M73761:374 KC202840:473 KC202833:473 KC202845:473 KC202827:473
 |annotation=promoter-TSS (id-Trav14n-3)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=id-Trav14n-3
 |nearest_refseq=
+|nearest_transcripts=AF479020:87 ENSMUST00000103635.3:306 L21700:306 X76971:306 M73761:374 KC202840:473 KC202833:473 KC202845:473 KC202827:473
 |nearest_unigene=id-Trav14n-3
 |peak_score=1