TSS: Rfmm 133664.1: Difference between revisions

Revision as of 18:45, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_133664.1
Species:	mouse
Chr:	chr14

Start:	103584311
End:	103584382
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2483438,EM10E1024091)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_166861.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AK007026:-286

Gene_name:	Gm34758
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	11
Nearest PromoterID:	NR_166861.1
Entrez ID:	Gm34758
Nearest Unigene:	NR_166861
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Gm34758
Gene Alias:
Gene Type:
CpG%:	0.070423
GC%:	0.736111
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NR_166861.1:0 AK007026:-286
 |annotation=promoter-TSS (NM_207215.2)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_166861.1
 |nearest_refseq=
+|nearest_transcripts=AK007026:-286
 |nearest_unigene=NR_166861
 |peak_score=1