TSS: Rfmm 13753.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF193259:191 MA428836:191 DQ486026:192 ENSMUST00000113278.9:205 NM_001198790.1:205 AK046613:205
|annotation=promoter-TSS (NM_001198790.1)
|annotation=promoter-TSS (NM_001198790.1)
|ccre_category=pELS
|ccre_category=pELS
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|nearest_promoter_id=NM_001198790.1
|nearest_promoter_id=NM_001198790.1
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=DQ486026:192 ENSMUST00000113278.9:205 NM_001198790.1:205 AK046613:205
|nearest_unigene=NM_001198792
|nearest_unigene=NM_001198792
|peak_score=1
|peak_score=1

Revision as of 19:47, 13 November 2024

Basic information about the TSS

TSS ID:rfmm_13753.1
Species:mouse
Chr:chr2
Start:32511542
End:32511565
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:pELS (EM10D2632711,EM10E1086566)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF193259:191
MA428836:191
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • DQ486026:192
  • ENSMUST00000113278.9:205
  • NM_001198790.1:205
  • AK046613:205
view more...
Gene_name:Ak1
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-217
Nearest PromoterID:NM_001198790.1
Entrez ID:Ak1
Nearest Unigene:NM_001198792
Nearest Refseq:
Nearest Ensembl:
Gene Name:Ak1
Gene Alias:
Gene Type:
CpG%:0.000000
GC%:0.458333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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