TSS: Rfmm 149573.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENSMUST00000024817.15:0 ENSMUST00000162588.3:0 ENSMUST00000172485.8:0 ENSMUST00000234498.2:0 ENSMUST00000130871.2:0 ENSMUST00000161952.2:0 NM_021419.2:0 NR_132314.1:0 AK147168:0 BC021778:0 AK076180:0 AK172991:0 ENSMUST00000234362.2:40 CT010295:40 AK219887:129 AK019779:355
|annotation=promoter-TSS (NM_021419.2)
|annotation=promoter-TSS (NM_021419.2)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_021419.2
|nearest_promoter_id=NM_021419.2
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=ENSMUST00000234362.2:40 CT010295:40 AK219887:129 AK019779:355
|nearest_unigene=NM_021419
|nearest_unigene=NM_021419
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENSMUST00000024817.15 ENSMUST00000162588.3 ENSMUST00000172485.8 ENSMUST00000234498.2 ENSMUST00000130871.2 ENSMUST00000161952.2 AK147168 BC021778 AK076180 AK172991
|transcript_name=ENSMUST00000024817.15 ENSMUST00000162588.3 ENSMUST00000172485.8 ENSMUST00000234498.2 ENSMUST00000130871.2 ENSMUST00000161952.2 NM_021419.2 NR_132314.1 AK147168 BC021778 AK076180 AK172991
|tss_cluster_detected=5
|tss_cluster_detected=5
|tss_id=rfmm_149573.1
|tss_id=rfmm_149573.1

Revision as of 23:04, 13 November 2024

Basic information about the TSS

TSS ID:rfmm_149573.1
TSS ID(Version3):mm_137788.1
mm_137787.1
mm_137789.1
Species:mouse
Chr:chr17
Start:29833761
End:29833902
Strand:+
Source datasetsFANTOM5|EPD|GSE117655|DRA000914|PRJDB10397
ProtocolCAGE|TSS_database|deepCAGE|CAGE_and_CAGEscan|C1CAGE
TSS cluster detected*5

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS,CTCF-bound (EM10D2554396,EM10E1053265)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000024817.15:0
ENSMUST00000162588.3:0
ENSMUST00000172485.8:0
ENSMUST00000234498.2:0
ENSMUST00000130871.2:0
ENSMUST00000161952.2:0
NM_021419.2:0
NR_132314.1:0
AK147168:0
BC021778:0
AK076180:0
AK172991:0
GeneID:106014251 58230
HGNC/MGI_ID:MGI:1929069 MGI:5547779
UniProt_ID:A0A3Q4EGU3 E0CXC2 E0CY08 G3UZZ4 Q6A027 Q8VC56
Nearer transcript ids and distances:
  • ENSMUST00000234362.2:40
  • CT010295:40
  • AK219887:129
  • AK019779:355
view more...
Gene_name:Rnf8
Gene_symbol:Gm28043 Rnf8
Gene_synonyms:3830404E21Rik AIP37
Gene_source:MGI:1929069 MGI:5547779



TATA-Box annotation

Distance to TSS:68
Nearest PromoterID:NM_021419.2
Entrez ID:Rnf8
Nearest Unigene:NM_021419
Nearest Refseq:
Nearest Ensembl:
Gene Name:Rnf8
Gene Alias:
Gene Type:
CpG%:0.113475
GC%:0.669014
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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