TSS: Rfmm 151876.1: Difference between revisions

Revision as of 23:41, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_151876.1
Species:	mouse
Chr:	chr17

Start:	40158548
End:	40158548
Strand:	+

Source datasets

GSE117655

Protocol

deepCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AY194859:14
GeneID:	387239
HGNC/MGI_ID:	MGI:2676865
UniProt_ID:
Nearer transcript ids and distances:	AB352347:-78 AB350881:80 AB352917:80 BC042411:-366 DQ540853:402 DQ541113:-442 DQ553409:-454 AB349980:-462 K01380:478 M55272:494 view more...

Gene_name:	Rn18s-rs5
Gene_symbol:	Mir199b
Gene_synonyms:	Mirn199b mmu-mir-199b
Gene_source:	MGI:2676865

TATA-Box annotation

Distance to TSS:	1303
Nearest PromoterID:	Rn18s-rs5
Entrez ID:	Rn18s-rs5
Nearest Unigene:	Rn18s-rs5
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Rn18s-rs5
Gene Alias:
Gene Type:	NA
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AY194859:14 AB352347:-78 AB350881:80 AB352917:80 BC042411:-366 DQ540853:402 DQ541113:-442 DQ553409:-454 AB349980:-462 K01380:478 M55272:494
 |annotation=TTS (XM_036160881.1)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=Rn18s-rs5
 |nearest_refseq=
+|nearest_transcripts=AB352347:-78 AB350881:80 AB352917:80 BC042411:-366 DQ540853:402 DQ541113:-442 DQ553409:-454 AB349980:-462 K01380:478 M55272:494
 |nearest_unigene=Rn18s-rs5
 |peak_score=1