TSS: Rfmm 151897.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=AY194859:-8 AB350881:42 AB352917:42 AB352347:-100 DQ540853:364 BC042411:-388 K01380:440 M55272:456 DQ541113:-464 DQ553409:-476 DQ541851:480 AB349980:-484 AB351077:491 | |||
|annotation=TTS (XM_036160881.1) | |annotation=TTS (XM_036160881.1) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=Rn18s-rs5 | |nearest_promoter_id=Rn18s-rs5 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=AB350881:42 AB352917:42 AB352347:-100 DQ540853:364 BC042411:-388 K01380:440 M55272:456 DQ541113:-464 DQ553409:-476 DQ541851:480 AB349980:-484 AB351077:491 | |||
|nearest_unigene=Rn18s-rs5 | |nearest_unigene=Rn18s-rs5 | ||
|peak_score=1 | |peak_score=1 | ||
Revision as of 23:41, 13 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5|DRA000914|PRJDB10397|GSE117655 | |||||||||||||||
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| Protocol | CAGE|CAGE_and_CAGEscan|C1CAGE|deepCAGE | |||||||||||||||
| TSS cluster detected* | 4 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1333 |
|---|---|
| Nearest PromoterID: | Rn18s-rs5 |
| Entrez ID: | Rn18s-rs5 |
| Nearest Unigene: | Rn18s-rs5 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Rn18s-rs5 |
| Gene Alias: | |
| Gene Type: | NA |
| CpG%: | 0.000000 |
| GC%: | 0.705882 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.