TSS: Rfmm 160690.1: Difference between revisions

Revision as of 02:06, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_160690.1
Species:	mouse
Chr:	chr19

Start:	4889438
End:	4889510
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2601302,EM10E1072540)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK029877:0 BC145660:0 DQ702681:0
GeneID:	399599
HGNC/MGI_ID:	MGI:3026882
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000088653.3:-44 NM_207268.3:-44 view more...

Gene_name:	Ccdc87
Gene_symbol:	Ccdc87
Gene_synonyms:	4931419P11Rik
Gene_source:	MGI:3026882

TATA-Box annotation

Distance to TSS:	80
Nearest PromoterID:	NM_207268.3
Entrez ID:	Ccdc87
Nearest Unigene:	NM_207268
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Ccdc87
Gene Alias:
Gene Type:
CpG%:	0.055556
GC%:	0.534247
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK029877:0 BC145660:0 DQ702681:0 ENSMUST00000088653.3:-44 NM_207268.3:-44
 |annotation=promoter-TSS (NM_016892.3)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_207268.3
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000088653.3:-44 NM_207268.3:-44
 |nearest_unigene=NM_207268
 |peak_score=1
@@ Line 33: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=AK029877 BC145660
+|transcript_name=AK029877 BC145660 DQ702681
 |tss_cluster_detected=2
 |tss_id=rfmm_160690.1