TSS: Rfmm 16166.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=NM_001359971.1:151 NM_053263.1:151 NM_198090.2:151 NM_146130.3:151 ENSMUST00000111964.8:153 AK133860:153 ENSMUST00000111962.8:159 BC038364:169 AK169663:170 AB201711:171 ENSMUST00000132392.2:172 ENSMUST00000111961.8:172 BC157919:182 BC116251:182 BC023908:192 ENSMUST00000164947.9:210 ENSMUST00000090792.11:210
|annotation=promoter-TSS (NM_001359971.1)
|annotation=promoter-TSS (NM_001359971.1)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=XR_866271.4
|nearest_promoter_id=XR_866271.4
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=ENSMUST00000111964.8:153 AK133860:153 ENSMUST00000111962.8:159 BC038364:169 AK169663:170 AB201711:171 ENSMUST00000132392.2:172 ENSMUST00000111961.8:172 BC157919:182 BC116251:182 BC023908:192 ENSMUST00000164947.9:210 ENSMUST00000090792.11:210
|nearest_unigene=NM_053263
|nearest_unigene=NM_053263
|peak_score=1
|peak_score=1

Revision as of 02:23, 14 November 2024

Basic information about the TSS

TSS ID:rfmm_16166.1
Species:mouse
Chr:chr2
Start:75489437
End:75489452
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS,CTCF-bound (EM10D2645239,EM10E1091440)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:NM_001359971.1:151
NM_053263.1:151
NM_198090.2:151
NM_146130.3:151
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000111964.8:153
  • AK133860:153
  • ENSMUST00000111962.8:159
  • BC038364:169
  • AK169663:170
  • AB201711:171
  • ENSMUST00000132392.2:172
  • ENSMUST00000111961.8:172
  • BC157919:182
  • BC116251:182
  • BC023908:192
  • ENSMUST00000164947.9:210
  • ENSMUST00000090792.11:210
view more...
Gene_name:Hnrnpa3
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-5
Nearest PromoterID:XR_866271.4
Entrez ID:Hnrnpa3
Nearest Unigene:NM_053263
Nearest Refseq:
Nearest Ensembl:
Gene Name:Hnrnpa3
Gene Alias:
Gene Type:
CpG%:0.066667
GC%:0.562500
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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