TSS: Rfmm 162826.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_008023.2:-4 X92591:-4 ENSMUST00000072915.4:21 BC139476:21 BC139477:21 BC115976:116 | |||
|annotation=promoter-TSS (NM_008023.2) | |annotation=promoter-TSS (NM_008023.2) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NM_008023.2 | |nearest_promoter_id=NM_008023.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=ENSMUST00000072915.4:21 BC139476:21 BC139477:21 BC115976:116 | |||
|nearest_unigene=NM_008023 | |nearest_unigene=NM_008023 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=X92591 | |transcript_name=NM_008023.2 X92591 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfmm_162826.1 | |tss_id=rfmm_162826.1 | ||
Revision as of 02:42, 14 November 2024
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D1639130,EM10E0673356) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_008023.2 |
| Entrez ID: | Foxb2 |
| Nearest Unigene: | NM_008023 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Foxb2 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.