TSS: Rfmm 28893.1: Difference between revisions

Revision as of 08:21, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_28893.1
TSS ID(Version3):	mm_24741.1
Species:	mouse
Chr:	chr3

Start:	95194029
End:	95194093
Strand:	+

Source datasets

FANTOM5|PRJDB10397|DRA000914

Protocol

CAGE|C1CAGE|CAGE_and_CAGEscan

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	pELS (EM10D2701081,EM10E1113785)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Mindy1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	3215
Nearest PromoterID:	XM_011240261.3
Entrez ID:	Mindy1
Nearest Unigene:	XM_036163367
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Mindy1
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.492308
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=exon (XM_030252859.2, exon 2 of 10)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XM_011240261.3
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=XM_036163367
 |peak_score=1