TSS: Rfmm 29357.1: Difference between revisions

Revision as of 08:28, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_29357.1
Species:	mouse
Chr:	chr3

Start:	97536161
End:	97536180
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D1795342,EM10E0737933)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000133017.8:0 ENSMUST00000107049.2:0 AK133675:0
GeneID:	14263
HGNC/MGI_ID:	MGI:1310004
UniProt_ID:	P97872
Nearer transcript ids and distances:	ENSMUST00000029729.15:-7 NM_001161765.1:-7 BC022991:11 AK147040:-16 ENSMUST00000140283.2:19 ENSMUST00000107050.8:-41 NM_001161763.1:-41 NM_010232.5:-41 AK162951:-41 NM_001355119.1:155 U90535:186 view more...

Gene_name:	Fmo5
Gene_symbol:	Fmo5
Gene_synonyms:	5033418D19Rik
Gene_source:	MGI:1310004

TATA-Box annotation

Distance to TSS:	-5
Nearest PromoterID:	XM_011240013.3
Entrez ID:	Fmo5
Nearest Unigene:	XM_030252420
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Fmo5
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENSMUST00000133017.8:0 ENSMUST00000107049.2:0 AK133675:0 ENSMUST00000029729.15:-7 NM_001161765.1:-7 BC022991:11 AK147040:-16 ENSMUST00000140283.2:19 ENSMUST00000107050.8:-41 NM_001161763.1:-41 NM_010232.5:-41 AK162951:-41 NM_001355119.1:155 U90535:186
 |annotation=promoter-TSS (NM_001161763.1)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XM_011240013.3
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000029729.15:-7 NM_001161765.1:-7 BC022991:11 AK147040:-16 ENSMUST00000140283.2:19 ENSMUST00000107050.8:-41 NM_001161763.1:-41 NM_010232.5:-41 AK162951:-41 NM_001355119.1:155 U90535:186
 |nearest_unigene=XM_030252420
 |peak_score=1