TSS: Rfmm 41629.1: Difference between revisions

Revision as of 11:48, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_41629.1
Species:	mouse
Chr:	chr4

Start:	149235029
End:	149235062
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	dELS (EM10D2762035,EM10E1138579)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF275799:-16 MA511376:-16
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF275800:-134 MA511377:-134 AK198787:250 AK205810:250 AK208960:250 LF275801:-314 MA511378:-314 LF275798:389 MA511375:389 AK195387:397 AK198478:397 AK203964:397 view more...

Gene_name:	Rpsa-ps12
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-7123
Nearest PromoterID:	Rpsa-ps12
Entrez ID:	Rpsa-ps12
Nearest Unigene:	Rpsa-ps12
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Rpsa-ps12
Gene Alias:
Gene Type:	NA
CpG%:	0.060606
GC%:	0.735294
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF275799:-16 MA511376:-16 LF275800:-134 MA511377:-134 AK198787:250 AK205810:250 AK208960:250 LF275801:-314 MA511378:-314 LF275798:389 MA511375:389 AK195387:397 AK198478:397 AK203964:397
 |annotation=exon (NM_001081274.2, exon 13 of 13)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=Rpsa-ps12
 |nearest_refseq=
+|nearest_transcripts=LF275800:-134 MA511377:-134 AK198787:250 AK205810:250 AK208960:250 LF275801:-314 MA511378:-314 LF275798:389 MA511375:389 AK195387:397 AK198478:397 AK203964:397
 |nearest_unigene=Rpsa-ps12
 |peak_score=1