TSS: Rfmm 42822.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENSMUST00000199955.5:0 ENSMUST00000196580.5:0 NM_011075.2:0 AK030328:0 ENSMUST00000009058.10:22 M14757:22 BC141363:27 BC150811:27 LF194841:-39 MA430418:-39
|annotation=promoter-TSS (NM_011075.2)
|annotation=promoter-TSS (NM_011075.2)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_011075.2
|nearest_promoter_id=NM_011075.2
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=ENSMUST00000009058.10:22 M14757:22 BC141363:27 BC150811:27 LF194841:-39 MA430418:-39
|nearest_unigene=NM_011075
|nearest_unigene=NM_011075
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENSMUST00000199955.5 ENSMUST00000196580.5 AK030328
|transcript_name=ENSMUST00000199955.5 ENSMUST00000196580.5 NM_011075.2 AK030328
|tss_cluster_detected=3
|tss_cluster_detected=3
|tss_id=rfmm_42822.1
|tss_id=rfmm_42822.1

Revision as of 12:08, 14 November 2024

Basic information about the TSS

TSS ID:rfmm_42822.1
Species:mouse
Chr:chr5
Start:8848140
End:8848164
Strand:+
Source datasetsPRJDB10397|GSE117655|DRA000914
ProtocolC1CAGE|deepCAGE|CAGE_and_CAGEscan
TSS cluster detected*3

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS (EM10D2767439,EM10E1141169)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000199955.5:0
ENSMUST00000196580.5:0
NM_011075.2:0
AK030328:0
GeneID:18669
HGNC/MGI_ID:MGI:97568
UniProt_ID:A0A0G2JGL4
Nearer transcript ids and distances:
  • ENSMUST00000009058.10:22
  • M14757:22
  • BC141363:27
  • BC150811:27
  • LF194841:-39
  • MA430418:-39
view more...
Gene_name:Abcb1b
Gene_symbol:Abcb1b
Gene_synonyms:Abcb1 Mdr1 Mdr1b Pgy-1 Pgy1 mdr
Gene_source:MGI:97568



TATA-Box annotation

Distance to TSS:5
Nearest PromoterID:NM_011075.2
Entrez ID:Abcb1b
Nearest Unigene:NM_011075
Nearest Refseq:
Nearest Ensembl:
Gene Name:Abcb1b
Gene Alias:
Gene Type:
CpG%:0.041667
GC%:0.720000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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