TSS: Rfmm 43975.1: Difference between revisions

Revision as of 12:28, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_43975.1
Species:	mouse
Chr:	chr5

Start:	31754321
End:	31754338
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2772887,EM10E1143043)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000200694.4:-39
GeneID:
HGNC/MGI_ID:	MGI:5663946
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000201999.4:-42 AK038023:-42 view more...

Gene_name:	Gm38424
Gene_symbol:	Gm43809
Gene_synonyms:
Gene_source:	MGI:5663946

TATA-Box annotation

Distance to TSS:	30
Nearest PromoterID:	XR_004942734.1
Entrez ID:	Gm38424
Nearest Unigene:	XR_004942734
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Gm38424
Gene Alias:
Gene Type:
CpG%:	0.176471
GC%:	0.722222
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENSMUST00000200694.4:-39 ENSMUST00000201999.4:-42 AK038023:-42
 |annotation=promoter-TSS (XR_004942732.1)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XR_004942734.1
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000201999.4:-42 AK038023:-42
 |nearest_unigene=XR_004942734
 |peak_score=1