TSS: Rfmm 57568.1: Difference between revisions

Revision as of 16:07, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_57568.1
Species:	mouse
Chr:	chr6

Start:	73446494
End:	73446504
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000204006.2:-43
GeneID:	66740
HGNC/MGI_ID:	MGI:1913990
UniProt_ID:
Nearer transcript ids and distances:	AK005631:-71 ENSMUST00000205241.2:-98 BC048456:-98 ENSMUST00000070163.6:-146 NM_025737.3:-146 AK016460:-146 view more...

Gene_name:	4931417E11Rik
Gene_symbol:	Jkampl
Gene_synonyms:	4931417E11Rik
Gene_source:	MGI:1913990

TATA-Box annotation

Distance to TSS:	151
Nearest PromoterID:	NM_025737.3
Entrez ID:	4931417E11Rik
Nearest Unigene:	NM_025737
Nearest Refseq:
Nearest Ensembl:
Gene Name:	4931417E11Rik
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.272727
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENSMUST00000204006.2:-43 AK005631:-71 ENSMUST00000205241.2:-98 BC048456:-98 ENSMUST00000070163.6:-146 NM_025737.3:-146 AK016460:-146
 |annotation=exon (NM_025737.3, exon 1 of 1)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_025737.3
 |nearest_refseq=
+|nearest_transcripts=AK005631:-71 ENSMUST00000205241.2:-98 BC048456:-98 ENSMUST00000070163.6:-146 NM_025737.3:-146 AK016460:-146
 |nearest_unigene=NM_025737
 |peak_score=1