TSS: Rfmm 58526.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000120933.5:0 ENSMUST00000184591.2:0 ENSMUST00000038804.4:0 NM_001278671.2:0 AK016973:0 AK014702:0 | |||
|annotation=promoter-TSS (NM_001278671.2) | |annotation=promoter-TSS (NM_001278671.2) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NM_001278671.2 | |nearest_promoter_id=NM_001278671.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts= | |||
|nearest_unigene=XM_036152374 | |nearest_unigene=XM_036152374 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000120933.5 ENSMUST00000184591.2 ENSMUST00000038804.4 AK016973 AK014702 | |transcript_name=ENSMUST00000120933.5 ENSMUST00000184591.2 ENSMUST00000038804.4 NM_001278671.2 AK016973 AK014702 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfmm_58526.1 | |tss_id=rfmm_58526.1 | ||
Revision as of 16:23, 14 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
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| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2835054,EM10E1169207) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -9 |
|---|---|
| Nearest PromoterID: | NM_001278671.2 |
| Entrez ID: | Kbtbd12 |
| Nearest Unigene: | XM_036152374 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Kbtbd12 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.161290 |
| GC%: | 0.750000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.