TSS: Rfmm 64499.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF196105:-484 MA431682:-484
|annotation=exon (NM_001305819.1, exon 3 of 3)
|annotation=exon (NM_001305819.1, exon 3 of 3)
|ccre_category=pELS
|ccre_category=pELS
Line 25: Line 26:
|nearest_promoter_id=NM_001305819.1
|nearest_promoter_id=NM_001305819.1
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=
|nearest_unigene=NM_009696
|nearest_unigene=NM_009696
|peak_score=1
|peak_score=1

Revision as of 18:00, 14 November 2024

Basic information about the TSS

TSS ID:rfmm_64499.1
Species:mouse
Chr:chr7
Start:19430517
End:19430542
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:pELS,CTCF-bound (EM10D2858610,EM10E1179533)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF196105:-484
MA431682:-484
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:Apoe
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:1794
    Nearest PromoterID:NM_001305819.1
    Entrez ID:Apoe
    Nearest Unigene:NM_009696
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Apoe
    Gene Alias:
    Gene Type:
    CpG%:0.080000
    GC%:0.730769
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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