TSS: Rfmm 67586.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF292604:-34 MA528181:-34 LF292606:59 MA528183:59 LF196275:-310 MA431852:-310
|annotation=exon (NM_001355045.1, exon 7 of 7)
|annotation=exon (NM_001355045.1, exon 7 of 7)
|ccre_category=dELS
|ccre_category=dELS
Line 25: Line 26:
|nearest_promoter_id=NM_001355045.1
|nearest_promoter_id=NM_001355045.1
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=LF292606:59 MA528183:59 LF196275:-310 MA431852:-310
|nearest_unigene=XM_006540987
|nearest_unigene=XM_006540987
|peak_score=1
|peak_score=1

Revision as of 18:50, 14 November 2024

Basic information about the TSS

TSS ID:rfmm_67586.1
Species:mouse
Chr:chr7
Start:44732645
End:44732684
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:dELS (EM10D2055469,EM10E0848140)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF292604:-34
MA528181:-34
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • LF292606:59
  • MA528183:59
  • LF196275:-310
  • MA431852:-310
view more...
Gene_name:Rcn3
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:8973
Nearest PromoterID:NM_001355045.1
Entrez ID:Rcn3
Nearest Unigene:XM_006540987
Nearest Refseq:
Nearest Ensembl:
Gene Name:Rcn3
Gene Alias:
Gene Type:
CpG%:0.025641
GC%:0.525000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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