TSS: Rfmm 73781.1: Difference between revisions

Revision as of 20:34, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_73781.1
Species:	mouse
Chr:	chr7

Start:	128858752
End:	128858780
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2890578,EM10E1193506)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000094018.6:0 ENSMUST00000206551.2:0 ENSMUST00000206918.2:0 ENSMUST00000205630.2:0 ENSMUST00000205896.2:0 AK081292:0
GeneID:	381925
HGNC/MGI_ID:	MGI:2685936
UniProt_ID:	A0A0U1RP67 A0A0U1RPE2 Q0VBU9
Nearer transcript ids and distances:	NM_001080963.1:38 BC120497:38 BC144735:38 view more...

Gene_name:	Plpp4
Gene_symbol:	Plpp4
Gene_synonyms:	C030048B12Rik LOC381925 Ppapdc1a
Gene_source:	MGI:2685936

TATA-Box annotation

Distance to TSS:	-52
Nearest PromoterID:	NM_001080963.1
Entrez ID:	Plpp4
Nearest Unigene:	XM_036153203
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Plpp4
Gene Alias:
Gene Type:
CpG%:	0.142857
GC%:	0.793103
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENSMUST00000094018.6:0 ENSMUST00000206551.2:0 ENSMUST00000206918.2:0 ENSMUST00000205630.2:0 ENSMUST00000205896.2:0 AK081292:0 NM_001080963.1:38 BC120497:38 BC144735:38
 |annotation=promoter-TSS (NM_001080963.1)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001080963.1
 |nearest_refseq=
+|nearest_transcripts=NM_001080963.1:38 BC120497:38 BC144735:38
 |nearest_unigene=XM_036153203
 |peak_score=1