TSS: Rfmm 80511.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=AK193603:-3 AK196213:-3 LF301256:19 MA536833:19 LF301255:135 MA536832:135 LF301254:316 MA536831:316 LF301253:382 MA536830:382 AK181347:441 EU639407:-470 ENSMUST00000125998.2:-492 ENSMUST00000128028.2:-496 BC003453:-500 | |||
|annotation=promoter-TSS (XR_106144.6) | |annotation=promoter-TSS (XR_106144.6) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_007591.3 | |nearest_promoter_id=NM_007591.3 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=LF301256:19 MA536833:19 LF301255:135 MA536832:135 LF301254:316 MA536831:316 LF301253:382 MA536830:382 AK181347:441 EU639407:-470 ENSMUST00000125998.2:-492 ENSMUST00000128028.2:-496 BC003453:-500 | |||
|nearest_unigene=NM_007591 | |nearest_unigene=NM_007591 | ||
|peak_score=1 | |peak_score=1 | ||
Revision as of 22:23, 14 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 603 |
|---|---|
| Nearest PromoterID: | NM_007591.3 |
| Entrez ID: | Calr |
| Nearest Unigene: | NM_007591 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Calr |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.090909 |
| GC%: | 0.583333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.