TSS: Rfmm 82160.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=AK015021:-7 LF197258:-16 MA432835:-16 LF303050:74 MA538627:74
|annotation=exon (NR_126329.1, exon 10 of 10)
|annotation=exon (NR_126329.1, exon 10 of 10)
|ccre_category=pELS
|ccre_category=pELS
Line 25: Line 26:
|nearest_promoter_id=NR_151498.1
|nearest_promoter_id=NR_151498.1
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=LF197258:-16 MA432835:-16 LF303050:74 MA538627:74
|nearest_unigene=NR_151498
|nearest_unigene=NR_151498
|peak_score=1
|peak_score=1

Revision as of 22:50, 14 November 2024

Basic information about the TSS

TSS ID:rfmm_82160.1
Species:mouse
Chr:chr8
Start:109978331
End:109978345
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:pELS (EM10D2154748,EM10E0888922)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AK015021:-7
GeneID:105243282
HGNC/MGI_ID:MGI:1918204
UniProt_ID:Q9D5Q7
Nearer transcript ids and distances:
  • LF197258:-16
  • MA432835:-16
  • LF303050:74
  • MA538627:74
view more...
Gene_name:4922502B01Rik
Gene_symbol:4922502B01Rik
Gene_synonyms:
Gene_source:MGI:1918204



TATA-Box annotation

Distance to TSS:-1961
Nearest PromoterID:NR_151498.1
Entrez ID:4922502B01Rik
Nearest Unigene:NR_151498
Nearest Refseq:
Nearest Ensembl:
Gene Name:4922502B01Rik
Gene Alias:
Gene Type:
CpG%:0.071429
GC%:0.733333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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