TSS: Rfmm 84614.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000066387.6:0 NM_001030290.2:0 BC148618:0 BC153184:0 | |||
|annotation=promoter-TSS (NM_001030290.2) | |annotation=promoter-TSS (NM_001030290.2) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001030290.2 | |nearest_promoter_id=NM_001030290.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts= | |||
|nearest_unigene=NM_001030290 | |nearest_unigene=NM_001030290 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000066387.6 BC148618 BC153184 | |transcript_name=ENSMUST00000066387.6 NM_001030290.2 BC148618 BC153184 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfmm_84614.1 | |tss_id=rfmm_84614.1 | ||
Revision as of 23:29, 14 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001030290.2 |
| Entrez ID: | Rdh8 |
| Nearest Unigene: | NM_001030290 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Rdh8 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.