TSS: Rfmm 88104.1: Difference between revisions

Revision as of 00:27, 15 November 2024

Basic information about the TSS

TSS ID:	rfmm_88104.1
Species:	mouse
Chr:	chr9

Start:	61898006
End:	61898011
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	dELS (EM10D2197786,EM10E0908277)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Paqr5
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-1588
Nearest PromoterID:	XM_036155349.1
Entrez ID:	Paqr5
Nearest Unigene:	XM_036155349
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Paqr5
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (XR_004935584.1, intron 1 of 6)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XM_036155349.1
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=XM_036155349
 |peak_score=1