TSS: Rfmm 90363.1: Difference between revisions

Revision as of 01:04, 15 November 2024

Basic information about the TSS

TSS ID:	rfmm_90363.1
Species:	mouse
Chr:	chr9

Start:	96901098
End:	96901121
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2966016,EM10E1225286)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF202929:191 MA438506:191
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000055433.5:202 BC094332:227 ENSMUST00000064445.2:281 AK083698:281 view more...

Gene_name:	Spsb4
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-701
Nearest PromoterID:	NM_145134.3
Entrez ID:	Spsb4
Nearest Unigene:	NM_145134
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Spsb4
Gene Alias:
Gene Type:
CpG%:	0.043478
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF202929:191 MA438506:191 ENSMUST00000055433.5:202 BC094332:227 ENSMUST00000064445.2:281 AK083698:281
 |annotation=promoter-TSS (NM_145134.3)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_145134.3
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000055433.5:202 BC094332:227 ENSMUST00000064445.2:281 AK083698:281
 |nearest_unigene=NM_145134
 |peak_score=1