TSS: Rfmm 96504.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=TTS (XM_030244870.2)
|annotation=TTS (XM_030244870.2)
|ccre_category=pELS
|ccre_category=pELS
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|nearest_promoter_id=NM_001005419.2
|nearest_promoter_id=NM_001005419.2
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=
|nearest_unigene=NM_001005419
|nearest_unigene=NM_001005419
|peak_score=1
|peak_score=1

Revision as of 02:44, 15 November 2024

Basic information about the TSS

TSS ID:rfmm_96504.1
Species:mouse
Chr:chr10
Start:67383653
End:67383668
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:pELS,CTCF-bound (EM10D2326968,EM10E0958145)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:Ado
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:1125
    Nearest PromoterID:NM_001005419.2
    Entrez ID:Ado
    Nearest Unigene:NM_001005419
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Ado
    Gene Alias:
    Gene Type:
    CpG%:0.066667
    GC%:0.687500
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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