TSS: Rfmm 99175.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=NM_018797.3:118 ENSMUST00000099337.5:128 AF190578:385
|annotation=promoter-TSS (NM_018797.3)
|annotation=promoter-TSS (NM_018797.3)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=XM_030245180.2
|nearest_promoter_id=XM_030245180.2
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=ENSMUST00000099337.5:128 AF190578:385
|nearest_unigene=NM_018797
|nearest_unigene=NM_018797
|peak_score=1
|peak_score=1

Revision as of 03:29, 15 November 2024

Basic information about the TSS

TSS ID:rfmm_99175.1
Species:mouse
Chr:chr10
Start:94780825
End:94780854
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS (EM10D2337237,EM10E0962993)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:NM_018797.3:118
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000099337.5:128
  • AF190578:385
view more...
Gene_name:Plxnc1
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:36
Nearest PromoterID:XM_030245180.2
Entrez ID:Plxnc1
Nearest Unigene:NM_018797
Nearest Refseq:
Nearest Ensembl:
Gene Name:Plxnc1
Gene Alias:
Gene Type:
CpG%:0.000000
GC%:0.566667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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