TSS: Rfhg 100153.1: Difference between revisions

Latest revision as of 11:09, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_100153.1
Species:	human
Chr:	chr7

Start:	130913229
End:	130913231
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D4031168,EH38E2590693)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000418546.1:32
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000447307.5:53 ENST00000432045.6:-79 NR_110473.1:-79 NR_034120.1:-79 NR_110472.1:-79 AK095549:-79 LP896493:-79 GU321462:98 MG322760:122 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	80
Nearest PromoterID:	NR_034120
Entrez ID:	378805
Nearest Unigene:	Hs.150556
Nearest Refseq:	NM_001085379
Nearest Ensembl:	ENSG00000231721
Gene Name:
Gene Alias:	LincRNA-Pint\|MKLN1-AS1\|PINT
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 16: / Line 16: @@
 |gene_description=long intergenic non-protein coding RNA, p53 induced transcript
 |gene_id=
-|gene_name=LINC-PINT
+|gene_name=
 |gene_source=
 |gene_symbol=