TSS: Rfhg 101425.1: Difference between revisions

Latest revision as of 11:31, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_101425.1
Species:	human
Chr:	chr7

Start:	142796333
End:	142796391
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4041351,EH38E2597732)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000390412.1:0 AF088323:0
GeneID:	28566
HGNC/MGI_ID:	HGNC:12168 HGNC:12198
UniProt_ID:	A0A0A0MTA7
Nearer transcript ids and distances:	D50744:167 AB044117:168 AB076752:168 AF088726:170 AF088730:171 AB044123:173 AB076767:173 AB076782:173 L77728:173 AF088705:173 D50762:173 AB076785:174 D50755:174 KM004279:178 L77713:179 AF088749:179 M13867:-237 LT626065:288 X01410:448 D50769:456 JQ778264:456 AB076761:457 AB076794:457 AF088703:457 AF045802:457 AJ305362:457 AF179357:458 D32038:458 AF088702:458 D32019:460 D50743:460 AF088767:461 AF045807:461 AJ305360:461 JQ778260:461 AB076773:462 AF045808:462 AJ305361:462 Z77836:462 AF045804:465 AJ305364:465 M12424:469 AF327021:471 view more...

Gene_name:	T cell receptor beta joining 2-1; T cell receptor beta variable 21-1 (pseudogene)
Gene_symbol:	TRBJ2-1 TRBV21-1
Gene_synonyms:	TCRBJ2S1 TCRBV10S1P TCRBV21S1 TRBJ21 TRBV211
Gene_source:	HGNC:12168 HGNC:12198

TATA-Box annotation

Distance to TSS:	25392
Nearest PromoterID:	NM_002770
Entrez ID:	5645
Nearest Unigene:	Hs.449281
Nearest Refseq:	NM_002770
Nearest Ensembl:	ENSG00000275896
Gene Name:	T cell receptor beta joining 2-1; T cell receptor beta variable 21-1 (pseudogene)
Gene Alias:	TRY2\|TRY8\|TRYP2
Gene Type:	protein-coding
CpG%:	0.017241
GC%:	0.576271
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

Property "Nearest transcripts" (as page type) with input value "D50744:167 AB044117:168 AB076752:168 AF088726:170 AF088730:171 AB044123:173 AB076767:173 AB076782:173 L77728:173 AF088705:173 D50762:173 AB076785:174 D50755:174 KM004279:178 L77713:179 AF088749:179 M13867:-237 LT626065:288 X01410:448 D50769:456 JQ778264:456 AB076761:457 AB076794:457 AF088703:457 AF045802:457 AJ305362:457 AF179357:458 D32038:458 AF088702:458 D32019:460 D50743:460 AF088767:461 AF045807:461 AJ305360:461 JQ778260:461 AB076773:462 AF045808:462 AJ305361:462 Z77836:462 AF045804:465 AJ305364:465 M12424:469 AF327021:471" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 16: / Line 16: @@
 |gene_description=serine protease 2
 |gene_id=28566
-|gene_name=PRSS2
+|gene_name=T cell receptor beta joining 2-1; T cell receptor beta variable 21-1 (pseudogene)
 |gene_source=HGNC:12168 HGNC:12198
 |gene_symbol=TRBJ2-1 TRBV21-1
@@ Line 35: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000390412.1 D32026 D32032 D32037 L77705 AF088716 AF088725 MG790887 D50750 AF088724 AB076766 AB076779 D32031 AF088723 AF088782 AF088785 AF088799 AB076750 AB076753 AB044104 AB076758 D32034 U07135 S69569 AF088323 AF088524 D32036 U07138 AF088709 AF088781 AF088790 U07137 AF088743 AF088789 AB076763 AB076769 AF088721 AF088728 KM004276 D31827 AF088731
+|transcript_name=ENST00000390412.1 AF088323
 |tss_cluster_detected=1
 |tss_id=rfhg_101425.1