TSS: Rfhg 10298.1: Difference between revisions

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|gene_description=syntaxin binding protein 3
|gene_description=syntaxin binding protein 3
|gene_id=6814
|gene_id=6814
|gene_name=STXBP3
|gene_name=syntaxin binding protein 3
|gene_source=HGNC:11446
|gene_source=HGNC:11446
|gene_symbol=STXBP3
|gene_symbol=STXBP3
Line 35: Line 35:
|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000483586.5 ENST00000370008.4 ENST00000469338.1 NM_007269.4 LF383828 MA619405 AK290134 AK312910 AK291322 AK223170 D63506 LP895150 BC047764 BC028028 BC038099 LF353107 MA588684 AF032922 CU690494 KJ892225 KJ897620
|transcript_name=ENST00000483586.5 ENST00000370008.4 ENST00000469338.1 AK290134 AK312910 AK291322 AK223170 D63506 BC047764 BC028028 BC038099 AF032922 CU690494
|tss_cluster_detected=14
|tss_cluster_detected=14
|tss_id=rfhg_10298.1
|tss_id=rfhg_10298.1

Latest revision as of 11:59, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_10298.1
TSS ID(Version3):hg_4366.1
hg_4365.1
Species:human
Chr:chr1
Start:108746630
End:108746763
Strand:+
Source datasetsFANTOM5|EPD|DBTSS|ENCODE|PRJNA615891|PRJNA401781
|PRJNA548673|PRJNA4843412|DRA013844|PRJDB5282
ProtocolCAGE|TSS_database|TSS-seq|TIF-seq2|ReCappable-seq|NETCAGE
|RAMPAGE|SLIC_CAGE|oligo_capping|C1CAGE
TSS cluster detected*14

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2208224,EH38E1374282)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000483586.5:0
ENST00000370008.4:0
ENST00000469338.1:0
AK290134:0
AK312910:0
AK291322:0
AK223170:0
D63506:0
BC047764:0
BC028028:0
BC038099:0
AF032922:0
CU690494:0
GeneID:6814
HGNC/MGI_ID:HGNC:11446
UniProt_ID:O00186
Nearer transcript ids and distances:
    Gene_name:syntaxin binding protein 3
    Gene_symbol:STXBP3
    Gene_synonyms:UNC-18C
    Gene_source:HGNC:11446



    TATA-Box annotation

    Distance to TSS:22
    Nearest PromoterID:NM_007269
    Entrez ID:6814
    Nearest Unigene:Hs.530436
    Nearest Refseq:NM_007269
    Nearest Ensembl:ENSG00000116266
    Gene Name:syntaxin binding protein 3
    Gene Alias:MUNC18-3|MUNC18C|PSP|UNC-18C
    Gene Type:protein-coding
    CpG%:0.067669
    GC%:0.694030
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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