TSS: Rfhg 103637.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 16: | Line 16: | ||
|gene_description=defensin beta 135 | |gene_description=defensin beta 135 | ||
|gene_id=613209 | |gene_id=613209 | ||
|gene_name= | |gene_name=defensin beta 135 | ||
|gene_source=HGNC:32400 | |gene_source=HGNC:32400 | ||
|gene_symbol=DEFB135 | |gene_symbol=DEFB135 | ||
| Line 35: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000382208 | |transcript_name=ENST00000382208.3 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_103637.1 | |tss_id=rfhg_103637.1 | ||
Latest revision as of 12:11, 13 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | CTCF-only,CTCF-bound (EH38D4062744,EH38E2611330) |
|---|---|
| Category: | CTCF-only |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -63 |
|---|---|
| Nearest PromoterID: | NM_001033017 |
| Entrez ID: | 613209 |
| Nearest Unigene: | Hs.558284 |
| Nearest Refseq: | NM_001033017 |
| Nearest Ensembl: | ENSG00000205883 |
| Gene Name: | defensin beta 135 |
| Gene Alias: | DEFB136 |
| Gene Type: | protein-coding |
| CpG%: | 0.076923 |
| GC%: | 0.571429 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.