TSS: Rfhg 114692.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
 
Line 16: Line 16:
|gene_description=phosphatidylinositol glycan anchor biosynthesis class O
|gene_description=phosphatidylinositol glycan anchor biosynthesis class O
|gene_id=84720
|gene_id=84720
|gene_name=PIGO
|gene_name=phosphatidylinositol glycan anchor biosynthesis class O
|gene_source=HGNC:23215
|gene_source=HGNC:23215
|gene_symbol=PIGO
|gene_symbol=PIGO
Line 35: Line 35:
|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000378617.4 ENST00000361778.6 ENST00000465745.6 ENST00000492770.1 NM_001201484.2 NM_032634.4 NM_152850.4 AK074064
|transcript_name=ENST00000378617.4 ENST00000361778.6 ENST00000465745.6 ENST00000492770.1 AK074064
|tss_cluster_detected=8
|tss_cluster_detected=8
|tss_id=rfhg_114692.1
|tss_id=rfhg_114692.1

Latest revision as of 15:39, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_114692.1
Species:human
Chr:chr9
Start:35096558
End:35096640
Strand:-
Source datasetsPRJNA4843412|DRA013844|PRJNA401781|PRJNA615891|PRJNA548673
|PRJDB5282
ProtocolNETCAGE|CAGE|RAMPAGE|SLIC_CAGE|ReCappable-seq|C1CAGE
TSS cluster detected*8

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4187535,EH38E2691576)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000378617.4:0
ENST00000361778.6:0
ENST00000465745.6:0
ENST00000492770.1:0
AK074064:0
GeneID:84720
HGNC/MGI_ID:HGNC:23215
UniProt_ID:Q8TEQ8
Nearer transcript ids and distances:
  • ENST00000474436.1:8
  • AK090433:8
  • AL833956:10
  • LF206427:-111
  • MA442004:-111
  • ENST00000472208.1:304
  • ENST00000298004.9:338
  • BC065282:338
view more...
Gene_name:phosphatidylinositol glycan anchor biosynthesis class O
Gene_symbol:PIGO
Gene_synonyms:DKFZp434M222 FLJ00135 PIG-O
Gene_source:HGNC:23215



TATA-Box annotation

Distance to TSS:2
Nearest PromoterID:NM_152850
Entrez ID:84720
Nearest Unigene:Hs.522099
Nearest Refseq:NM_032634
Nearest Ensembl:ENSG00000165282
Gene Name:phosphatidylinositol glycan anchor biosynthesis class O
Gene Alias:HPMRS2
Gene Type:protein-coding
CpG%:0.109756
GC%:0.710843
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_114692.1&oldid=3585760"