TSS: Rfhg 11627.1: Difference between revisions

Latest revision as of 16:06, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_11627.1
TSS ID(Version3):	hg_14116.1
Species:	human
Chr:	chr1

Start:	144461599
End:	144461680
Strand:	-

Source datasets

FANTOM5|PRJDB5282|PRJNA4843412|DRA013844

Protocol

CAGE|C1CAGE|NETCAGE

TSS cluster detected^*

4

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2218932,EH38E1382010)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000488031.6:0 ENST00000584793.6:0 ENST00000584575.2:0
GeneID:	284565
HGNC/MGI_ID:	HGNC:28791
UniProt_ID:	Q8N660
Nearer transcript ids and distances:	ENST00000478419.5:8 ENST00000579734.6:41 view more...

Gene_name:	NBPF member 15
Gene_symbol:	NBPF15
Gene_synonyms:	MGC8902
Gene_source:	HGNC:28791

TATA-Box annotation

Distance to TSS:	-2175
Nearest PromoterID:	NM_001170755
Entrez ID:	284565
Nearest Unigene:	Hs.523572
Nearest Refseq:	NM_173638
Nearest Ensembl:	ENSG00000266338
Gene Name:	NBPF member 15
Gene Alias:	AB14\|AG3\|NBPF16
Gene Type:	protein-coding
CpG%:	0.098765
GC%:	0.756098
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=NBPF member 15
 |gene_id=284565
-|gene_name=NBPF15
+|gene_name=NBPF member 15
 |gene_source=HGNC:28791
 |gene_symbol=NBPF15
@@ Line 35: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=ENST00000488031.6 ENST00000584793.6 ENST00000584575.2 NM_001385426.1 NM_001385414.1 NM_001385425.1 NM_001385430.1 NM_001385444.1 NM_001385411.1 NM_001385428.1 NM_001385378.1 NM_001385436.1 NM_001385406.1 NM_001385437.1 NM_001385422.1 NM_001385408.1 NM_001385442.1 NM_001385431.1 NM_001170755.3 NM_001385435.1 NM_001385373.1 NM_001385415.1 NM_001385418.1 NM_001385429.1 NM_001385441.1 NM_001385440.1 NM_001385434.1 NM_001385423.1 NM_001385419.1 NM_001385375.1 NM_001385409.1 NM_001385445.1 NM_001385412.1 NM_001385404.1 NM_001385420.1 NM_173638.5 NM_001385433.1 NM_001385407.1 NM_001385410.1 NM_001385424.1 NM_001385421.1 NM_001385403.1 NM_001385376.1 NM_001385427.1 NM_001385413.1 NM_001385439.1 NM_001385432.1 NM_001385446.1 NM_001385405.1 NM_001385447.1 NM_001385448.1 NM_001385417.1 NM_001385438.1 NM_001385374.1 NM_001385443.1 NM_001385377.1 NM_001385416.1
+|transcript_name=ENST00000488031.6 ENST00000584793.6 ENST00000584575.2
 |tss_cluster_detected=4
 |tss_id=rfhg_11627.1